Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TLX3

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Human DND-41 cells
chip antibody
Sigma, HPA030504, Lot: R30201
cell line
Human DND-41 cells

Sequenced DNA Library

library_name
GSM5981783
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq analysis using the Illumina NextSeq500, 10-20 ng of ChIP DNA was processed for library generation using the NEBNext Ulta II DNA Library Prep kit following the manufacturer's protocol (New England Biolabs).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
31026424
Reads aligned (%)
92.0
Duplicates removed (%)
8.9
Number of peaks
21229 (qval < 1E-05)

hg19

Number of total reads
31026424
Reads aligned (%)
91.2
Duplicates removed (%)
10.2
Number of peaks
21065 (qval < 1E-05)

Base call quality data from DBCLS SRA